a

[Hussain Al Sadiq]

aaa

[jorz]

what do you have so far?

or do you expect someone to write it for you?

[sargon94]

Just give us a little code, have you started yet?

[MildewyTester]

I would love to help, but I'm not too experienced with c++. How can I start?

[lwtan90]

HI. I can help you. Working in a genome institute now. HOw to contact you?

[Hussain Al Sadiq]

Hi
My Email address is [e-mail]

[Hussain Al Sadiq]

Hi
This is what I have so far:
#include<iostream>
#include<fstream>
#include<string>
#include<cctype>
using namespace std;


int main()
{

ifstream infile;
infile.open("gene.txt");

ofstream outfile;
outfile.open("geneanalysis.txt", ios::app);

string line,mature_state,mature,evolving,A,G,T;


while ( !infile.eof())
{

getline(infile, line);
if (A>G)
{
mature_state=mature;
}
else
{
mature_state=evolving;
}

cout<<line<<endl;

outfile<<line<<"\n";
}

infile.close();
outfile.close();

return 0;
}


However, I am getting a problem with excuting the program because it shows me nothing, only black screen with no text. I think the problem goes with if (A>G), but how to fix it ??

[Hussain Al Sadiq]

My contact Adress is [e-mail]

Thank you :)

[lwtan90]

May I know how your file looks like?
I mean the geneanalysis.txt

[lwtan90]

#include<iostream>
#include<fstream>
#include<vector>
#include<string>

using namespace std;

void read_data()
{
    ifstream seq("gene.txt");
    ofstream output("geneanalysis.txt");

    if(seq.is_open()){
        while(!seq.eof()){
              string input;
              int A=0, G=0;
               getline(input,seq);
               for(int i=0; i<input.length(); i++)
               {
                     if(seq[i] == 'A') A++;
                     if(seq[i] == 'G') G++;
                }
                if(A>G) {
                      output<<seq<<endl;
                      output<<"Gene is mature."<<endl;
                      output<<endl;
                }else{
                      output<<seq<<endl;
                      output<<"Gene is evolving."<<endl;
                      output<<endl;
                }
        }
    }
}

int main()
{
    read_data();
    return 1;
}

[Veltas]

Not really sure why you'd choose C++ specifically for this one. Really Java or anything would've done...

[Hussain Al Sadiq]

Hi guys
I am not really sure that the professor want me to use the (seq) because it still a beginner class. However the file that I should read from should have the following code:

ATGGAAATGAATGATTTAAGAA
ATGATGATAATGGGTAGGTTAGTTA
GTGATGATGAGTGTATGATGGGAATTGG
ATGATGATGAGTATGATG

It is a text file and the result should looks like this:


Gene sequence Analysis Report

Gene: ATGGAAATGAATGATTTAAGAA
Number of A’s: 10
Number of G’s: 5
Maturity Level: mature

and it should print this to a new file called geneanlysis.txt


Thanks Guys

[Hussain Al Sadiq]

Any suggest guys..

Sorry lwtan90 the program does not work

[lwtan90]

Can you print out the errors? Or the output is wrong?

[Lowest0ne]

getline() on line 17 has the arguments in the wrong order.

What for the case when A and G are equal?